Page last modified 11:55, 13 Mar 2010 by gyurer
Table of contents
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| Wednesday, March 10, 2010 | |
| 6:00 – 7:00 pm | Dinner |
| 7:00 – 7:15 pm | Welcome Amy Chang, ASM |
| 7:15 – 8:00 pm | Institute Overview and Introductions Brad Goodner, Hiram College |
| 8:00 – 9:00 pm | What is a Gene? |
| 9:00 pm | Adjournment |
| Thursday, March 11, 2010 | |
| 8:00 – 8:45 am | Breakfast |
| 8:45 – 9:00 am | Introduction of the Day’s Events & Announcements |
| 9:00 – 11:00 am | Introduction to BLAST How the Algorithm Works Tie BLAST to Basic Gene Structures and to Evolutionary Change Cheryl Kerfeld, Joint Genome Institute |
| 11:00 am – 12:00 pm | At the completion of this session, participants will: 1. Understand the basics of how an E-value is calculated 2. Be familiar with how to manipulate experimental parameters in a BLAST search 3. Be able to interpret BLAST results and use them to illustrate concepts in the curriculum |
| Noon – 1:15 pm | Lunch |
| 1:15 – 3:00 pm | Gene Structure & Organization Start Codons Operons Synteny Brad Goodner, Hiram College |
| 3:00 – 3:30 pm | Overview of Gene Annotation |
| 3:30 – 5:45 pm | Mini-assignment #2 At the completion of this session, participants will: 1. Know how to move beyond a BLAST search to confirm a full-length gene 2. Confirm or change the position of a start codon 3. Predict possible operons and regulatory features |
| 5:45 – 6:15 pm | ASM Faculty Development Programs Kelly Gull, ASM |
| 6:15 – 7:15 pm | Dinner |
| 7:15 – 9:00 pm | Projects to Address Teaching Challenges |
| 9:00 pm | Adjournment |
| Friday, March 12, 2010 | |
| 8:00 – 8:45 am | Breakfast |
| 8:45 – 9:00 am | Introduction of the Day’s Events & Announcements |
| 9:00 – 11:00 am | Protein Sequence & Structure Hydrophobicity Pfams & Other Weak Patterns Structure Kathleen Scott, University of South Florida |
| 11:00 am – 12:00 pm | Mini-assignment #3 At the completion of this session, participants will: 1. be familiar with the basics of protein evolution 2. be able to identify motifs in amino acid sequences using a variety of web-available bioinformatics tools 3. be able to align sequences and search the alignment to ensure that all conserved regions are correctly juxtaposed in the alignment |
| Noon – 1:00 pm | Lunch |
| 1:00 – 2:00 pm | Evolutionary Analysis Sam Donovan, University of Pittsburgh |
| 2:00 - 3:45 pm | Mini-assignment #4 At the completion of this session, participants will: 1. be familiar with the basics of phylogenetic tree interpretation 2. be able to identify and avoid common tree reading misconceptions 3. be able to use a variety of web-available tools to build phylogenetic trees from molecular sequence data. |
| 3:45 – 4:00 pm | Break |
| 4:00 – 7:00 pm | Group Work on Teaching Challenges |
| | Dinner on Your Own |
| Saturday, March 13, 2010 | |
| 7:30 – 8:30 am | Presentation Uploads |
| 8:00 – 8:30 am | Breakfast |
| 8:30 – 11:15 am | Participant Presentations |
| 11:15 am – 12:00 pm | Evaluations, Reflections, and Closing remarks |
| Noon | Adjournment |
- Tag page
- What links here
Files 5
| File | Size | Date | Attached by | |||
|---|---|---|---|---|---|---|
 | mystery sequences for interpro scan.docx No description | 11.22 kB | 16:37, 11 Mar 2010 | kdaley | Actions | |
| Mystery genes for alignment.docx No description | 14.69 kB | 16:37, 11 Mar 2010 | kdaley | Actions | |
| mystery genes ABC.doc No description | 26.5 kB | 16:37, 11 Mar 2010 | kdaley | Actions | |
| BioinformaticsGuideMetagenomics.pdf No description | 5.69 MB | 00:25, 13 Mar 2011 | kgull | Actions | |
| Things to Consider For Metagenomics Projects.doc No description | 32.5 kB | 00:25, 13 Mar 2011 | kgull | Actions | |
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