Page last modified 13:42, 4 Mar 2011 by chooker
Table of contents
No headers Assignment #3
Pre-Institute Readings and Tutorial
1. What is a Gene?
a. Read Pearson, Helen. 2006. What is a Gene? Nature. Vol. 441: 25.
b. Print/Download the question worksheet. This will be used to help generate discussion during the opening
night of the Institute.
2. How to Retrieve Protein and Nucleotide Sequences from NCBI
Download and follow this tutorial.
Assignment #2
Invited Speaker – Brad Goodner, Hiram College
Gerstein, Mark B., Can Bruce, Joel S. Rozowsky, Deyou Zheng, Jiang Du, Jan O. Korbel, Olof Emanuelsson, Zhengdong D. Zhang, Sherman Weissman and Michael Snyder. 2007. What is a gene, post-ENCODE? History and updated definition. Genome Research. Vol. 17: 669-681.
Goodner, Brad. 2006. So you want to include bioinformatics in your course-go for it! Focus on Microbiology Education. Vol. 12, Number 3. p. 4-5.
Goodner, Brad W., Cathy A. Wheeler, Prudy J. Hall, and Steven C. Slater. 2003. Massively Parallel Undergraduates for Bacterial Genome Finishing. ASM News. Vol. 69, Number 12.
Invited Speaker – Cheryl Kerfeld, Joint Genome Institute
Kerfeld CA, Scott KM, 2011 Using BLAST to Teach “E-value-tionary” Concepts. PLoS Biol 9(2): e1001014. doi:10.1371/journal.pbio.1001014
Invited Speaker – Kathleen Scott, University of South Florida
Pevsner, J. Protein Analysis and Proteomics. Chapter 8. Bioinformatics and Structural Genomics. Wiley-Bass, 2003.
Invited Speaker – Tara Luke, Richard Stockton College of New Jersey
Baum, David A., Stacey DeWitt and Samuel S. Donovan. 2005. The tree-thinking challenge. Science. Vol. 310: 979-980.
Assignment 1: Introduction
1) Describe your teaching responsibilities and relationship to bioinformatics training/instruction,
2) Describe what you would like to take home as a result of attending the Institute, and 3) Tell us about your interests outside of the classroom and a book that you've read recently.
- Tag page
- What links here
Files 9
| File | Size | Date | Attached by | |||
|---|---|---|---|---|---|---|
 | Goodner. Genome Research.pdf No description | 394.63 kB | 13:31, 1 Mar 2011 | chooker | Actions | |
| Goodner.So You Want to Include Bioinformatics.pdf No description | 340.97 kB | 13:31, 1 Mar 2011 | chooker | Actions | |
| Goodner.ASMNewsDec03Article and Hiram schematic.pdf No description | 2.71 MB | 13:31, 1 Mar 2011 | chooker | Actions | |
| KerfeldScott_UsingBLAST_PLOS_Biology.pdf No description | 753.1 kB | 13:31, 1 Mar 2011 | chooker | Actions | |
| Scott.protein sequence and structure_Protein analysis.pdf No description | 1552.87 kB | 13:31, 1 Mar 2011 | chooker | Actions | |
| Baum-Science 2005.pdf No description | 154.12 kB | 13:33, 1 Mar 2011 | chooker | Actions | |
| NCBI FASTA sequences worksheet_v3.doc No description | 36 kB | 13:38, 4 Mar 2011 | chooker | Actions | |
| What is a gene Nature 2006.pdf No description | 676.97 kB | 13:38, 4 Mar 2011 | chooker | Actions | |
| 2011 What is a Gene Pre-Institute Assignment.doc No description | 24 kB | 13:38, 4 Mar 2011 | chooker | Actions | |
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