Page last modified 11:51, 12 Mar 2011 by kscott@cas.usf.edu
Table of contents
No headersUser manual for the Wiki:http://developer.mindtouch.com/en/docs/MindTouch/User_Manual
Integrated Microbial Genomes database: http://img.jgi.doe.gov
Ribosomal Database Project: http://rdp.cme.msu.edu
GreenGenes (similar to RDP above), for 16S genes and alignments: http://greengenes.lbl.gov
Expasy http://www.expasy.ch/
PFAM http://pfam.sanger.ac.uk/
- Tag page
- What links here
Files 19
| File | Size | Date | Attached by | |||
|---|---|---|---|---|---|---|
 | Goodner2011UndergradsAnnotation.ppt Brad's slides for 2011 BI Institute | 6.47 MB | 17:02, 9 Mar 2011 | goodnerbw | Actions | |
| PNAS-1992-Henikoff-10915-9.pdf Original paper describing the BLOSUM scoring matrices | 1079.79 kB | 11:04, 10 Mar 2011 | goodnerbw | Actions | |
| AnnotationErrors.pdf 2009 PLoS Computational Biology article on automated annotation errors | 1386.71 kB | 11:47, 10 Mar 2011 | goodnerbw | Actions | |
| BLAST_asm10_post.ppt BLAST_Kerfeld | 6.13 MB | 17:35, 10 Mar 2011 | ckerfeld | Actions | |
| D33B8F09d01_microbe.PDF Microbe article on Carboxysomes | 1197.37 kB | 17:35, 10 Mar 2011 | ckerfeld | Actions | |
| 01_Protein structure and evolution.pptx No description | 4.61 MB | 17:35, 10 Mar 2011 | kscott@cas.usf.edu | Actions | |
| 02_Tools for analyzing amino acid sequences.pptx No description | 3.02 MB | 17:36, 10 Mar 2011 | kscott@cas.usf.edu | Actions | |
| 03_Tools for comparing amino acid sequences_alignments_MUSCLE.pptx No description | 3.78 MB | 17:36, 10 Mar 2011 | kscott@cas.usf.edu | Actions | |
| Protein sequence links.docx No description | 11.94 kB | 17:37, 10 Mar 2011 | kscott@cas.usf.edu | Actions | |
| csoSCA sequences.fas No description | 5.74 kB | 17:38, 10 Mar 2011 | kscott@cas.usf.edu | Actions | |
| MUSCLE.pdf No description | 399.58 kB | 17:38, 10 Mar 2011 | kscott@cas.usf.edu | Actions | |
| web logo for sequence logos.pdf No description | 172.29 kB | 17:39, 10 Mar 2011 | kscott@cas.usf.edu | Actions | |
| ASM EDUCATION DEPARTMENT PROGRAMS.doc No description | 37 kB | 23:46, 10 Mar 2011 | kgull | Actions | |
| Links.docx No description | 11.93 kB | 09:53, 11 Mar 2011 | kscott@cas.usf.edu | Actions | |
| csoSCA sequences1.fas No description | 5.74 kB | 11:38, 11 Mar 2011 | kscott@cas.usf.edu | Actions | |
| Instructions for Creating a Reviewer Account in JMBE.pdf Instructions for creating a review acct in JMBE | 14.19 kB | 14:09, 11 Mar 2011 | kgull | Actions | |
| Evolutionary Analysis.ppt No description | 3.01 MB | 14:24, 11 Mar 2011 | tluke | Actions | |
| Evolutionary Analysis.key presentation in keynote format (for mac) | 15.73 MB | 16:33, 11 Mar 2011 | tluke | Actions | |
| plos_img_act.PDF PLOS Biology Paper on IMG-ACT. Use the html version on the PLOS site to access links that take you to an annotation worksheet and tutorials on related tools. (PLOS is open access) | 556.39 kB | 10:23, 12 Mar 2011 | ckerfeld | Actions | |
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